- recipe bioconductor-miasim
Microbiome Data Simulation
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/miaSim.html
- License:
Artistic-2.0 | file LICENSE
- Recipe:
Microbiome time series simulation with generalized Lotka-Volterra model, Self-Organized Instability (SOI), and other models. Hubbell's Neutral model is used to determine the abundance matrix. The resulting abundance matrix is applied to SummarizedExperiment or TreeSummarizedExperiment objects.
- package bioconductor-miasim¶
-
- Versions:
1.4.0-0
,1.0.0-0
- Depends:
bioconductor-matrixgenerics
>=1.10.0,<1.11.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
bioconductor-treesummarizedexperiment
>=2.6.0,<2.7.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-miasim
and update with:
conda update bioconductor-miasim
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-miasim:<tag>
(see bioconductor-miasim/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-miasim/README.html)