recipe bioconductor-miasim

Microbiome Data Simulation

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/miaSim.html

License:

Artistic-2.0 | file LICENSE

Recipe:

/bioconductor-miasim/meta.yaml

Microbiome time series simulation with generalized Lotka-Volterra model, Self-Organized Instability (SOI), and other models. Hubbell's Neutral model is used to determine the abundance matrix. The resulting abundance matrix is applied to SummarizedExperiment or TreeSummarizedExperiment objects.

package bioconductor-miasim

Versions:

1.4.0-0,  1.0.0-0

Depends:

• bioconductor-matrixgenerics >=1.10.0,<1.11.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-treesummarizedexperiment >=2.6.0,<2.7.0

• r-base >=4.2,<4.3.0a0

• r-desolve

• r-gtools

• r-powerlaw

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-miasim

and update with:

conda update bioconductor-miasim

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-miasim:<tag>

(see bioconductor-miasim/tags for valid values for <tag>)

Download stats

Link to this page

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