recipe bioconductor-miaviz

Microbiome Analysis Plotting and Visualization

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/miaViz.html

License:

Artistic-2.0 | file LICENSE

Recipe:

/bioconductor-miaviz/meta.yaml

The miaViz package implements plotting function to work with TreeSummarizedExperiment and related objects in a context of microbiome analysis. Among others this includes plotting tree, graph and microbiome series data. The package is part of the broader miaverse framework.

package bioconductor-miaviz

Versions:

1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-delayedarray >=0.20.0,<0.21.0

• bioconductor-dirichletmultinomial >=1.36.0,<1.37.0

• bioconductor-ggtree >=3.2.0,<3.3.0

• bioconductor-mia >=1.2.0,<1.3.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-scater >=1.22.0,<1.23.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• bioconductor-treesummarizedexperiment >=2.2.0,<2.3.0

• r-ape

• r-base >=4.1,<4.2.0a0

• r-dplyr

• r-ggnewscale

• r-ggplot2

• r-ggraph >=2.0

• r-purrr

• r-rlang

• r-tibble

• r-tidygraph

• r-tidyr

• r-tidytree

• r-viridis

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-miaviz

and update with:

conda update bioconductor-miaviz

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-miaviz:<tag>

(see bioconductor-miaviz/tags for valid values for <tag>)

Download stats

Link to this page

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