- recipe bioconductor-miaviz
Microbiome Analysis Plotting and Visualization
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/miaViz.html
- License:
Artistic-2.0 | file LICENSE
- Recipe:
The miaViz package implements plotting function to work with TreeSummarizedExperiment and related objects in a context of microbiome analysis. Among others this includes plotting tree, graph and microbiome series data. The package is part of the broader miaverse framework.
- package bioconductor-miaviz¶
-
- Versions:
1.2.0-0
,1.0.0-0
- Depends:
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-delayedarray
>=0.20.0,<0.21.0
bioconductor-dirichletmultinomial
>=1.36.0,<1.37.0
bioconductor-ggtree
>=3.2.0,<3.3.0
bioconductor-mia
>=1.2.0,<1.3.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-scater
>=1.22.0,<1.23.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
bioconductor-treesummarizedexperiment
>=2.2.0,<2.3.0
r-base
>=4.1,<4.2.0a0
r-ggraph
>=2.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-miaviz
and update with:
conda update bioconductor-miaviz
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-miaviz:<tag>
(see bioconductor-miaviz/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-miaviz/README.html)