recipe bioconductor-miaviz

Microbiome Analysis Plotting and Visualization

Homepage

https://bioconductor.org/packages/3.13/bioc/html/miaViz.html

License

Artistic-2.0 | file LICENSE

Recipe

/bioconductor-miaviz/meta.yaml

miaViz implements plotting function to work with TreeSummarizedExperiment and related objects in a context of microbiome analysis. Among others this includes plotting tree, graph and microbiome series data.

package bioconductor-miaviz

Versions

1.0.0-0

Depends

• bioconductor-biocgenerics >=0.38.0,<0.39.0

• bioconductor-biocparallel >=1.26.0,<1.27.0

• bioconductor-delayedarray >=0.18.0,<0.19.0

• bioconductor-dirichletmultinomial >=1.34.0,<1.35.0

• bioconductor-ggtree >=3.0.0,<3.1.0

• bioconductor-mia >=1.0.0,<1.1.0

• bioconductor-s4vectors >=0.30.0,<0.31.0

• bioconductor-scater >=1.20.0,<1.21.0

• bioconductor-summarizedexperiment >=1.22.0,<1.23.0

• bioconductor-treesummarizedexperiment >=2.0.0,<2.1.0

• r-ape

• r-base >=4.1,<4.2.0a0

• r-dplyr

• r-ggnewscale

• r-ggplot2

• r-ggraph >=2.0

• r-purrr

• r-rlang

• r-tibble

• r-tidygraph

• r-tidyr

• r-tidytree

• r-viridis

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-miaviz

and update with:

conda update bioconductor-miaviz

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-miaviz:<tag>

(see bioconductor-miaviz/tags for valid values for <tag>)

Download stats

Link to this page

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