recipe bioconductor-microbiomebenchmarkdata

Datasets for benchmarking in microbiome research

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/MicrobiomeBenchmarkData.html

License:

Artistic-2.0

Recipe:

/bioconductor-microbiomebenchmarkdata/meta.yaml

The MicrobiomeBenchmarkData package provides functionality to access microbiome datasets suitable for benchmarking. These datasets have some biological truth, which allows to have expected results for comparison. The datasets come from various published sources and are provided as TreeSummarizedExperiment objects. Currently, only datasets suitable for benchmarking differential abundance methods are available.

package bioconductor-microbiomebenchmarkdata

Versions:

1.0.0-0

Depends:

• bioconductor-biocfilecache >=2.6.0,<2.7.0

• bioconductor-data-packages >=20221107

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-treesummarizedexperiment >=2.6.0,<2.7.0

• curl

• r-ape

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-microbiomebenchmarkdata

and update with:

conda update bioconductor-microbiomebenchmarkdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-microbiomebenchmarkdata:<tag>

(see bioconductor-microbiomebenchmarkdata/tags for valid values for <tag>)

Download stats

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