- recipe bioconductor-microbiomebenchmarkdata
Datasets for benchmarking in microbiome research
- Homepage:
https://bioconductor.org/packages/3.16/data/experiment/html/MicrobiomeBenchmarkData.html
- License:
Artistic-2.0
- Recipe:
The MicrobiomeBenchmarkData package provides functionality to access microbiome datasets suitable for benchmarking. These datasets have some biological truth, which allows to have expected results for comparison. The datasets come from various published sources and are provided as TreeSummarizedExperiment objects. Currently, only datasets suitable for benchmarking differential abundance methods are available.
- package bioconductor-microbiomebenchmarkdata¶
-
- Versions:
1.0.0-0
- Depends:
bioconductor-biocfilecache
>=2.6.0,<2.7.0
bioconductor-data-packages
>=20221107
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
bioconductor-treesummarizedexperiment
>=2.6.0,<2.7.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-microbiomebenchmarkdata
and update with:
conda update bioconductor-microbiomebenchmarkdata
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-microbiomebenchmarkdata:<tag>
(see bioconductor-microbiomebenchmarkdata/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-microbiomebenchmarkdata/README.html)