recipe bioconductor-microbiomedasim

Microbiome Differential Abundance Simulation

Homepage

https://bioconductor.org/packages/3.11/bioc/html/microbiomeDASim.html

License

MIT + file LICENSE

Recipe

/bioconductor-microbiomedasim/meta.yaml

A toolkit for simulating differential microbiome data designed for longitudinal analyses. Several functional forms may be specified for the mean trend. Observations are drawn from a multivariate normal model. The objective of this package is to be able to simulate data in order to accurately compare different longitudinal methods for differential abundance.

package bioconductor-microbiomedasim

Versions

1.2.0-0,  1.0.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-metagenomeseq >=1.30.0,<1.31.0

• bioconductor-phyloseq >=1.32.0,<1.33.0

• r-base >=4.0,<4.1.0a0

• r-ggplot2

• r-mass

• r-matrix

• r-mvtnorm

• r-pbapply

• r-tmvtnorm

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-microbiomedasim

and update with:

conda update bioconductor-microbiomedasim

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-microbiomedasim:<tag>

(see bioconductor-microbiomedasim/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-microbiomedasim/README.html)