recipe bioconductor-microbiomeexplorer

Microbiome Exploration App

Homepage

https://bioconductor.org/packages/3.14/bioc/html/microbiomeExplorer.html

License

MIT + file LICENSE

Recipe

/bioconductor-microbiomeexplorer/meta.yaml

The MicrobiomeExplorer R package is designed to facilitate the analysis and visualization of marker-gene survey feature data. It allows a user to perform and visualize typical microbiome analytical workflows either through the command line or an interactive Shiny application included with the package. In addition to applying common analytical workflows the application enables automated analysis report generation.

package bioconductor-microbiomeexplorer

Versions

1.4.0-0,  1.2.0-0,  1.0.1-1,  1.0.1-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biomformat >=1.22.0,<1.23.0

• bioconductor-deseq2 >=1.34.0,<1.35.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-metagenomeseq >=1.36.0,<1.37.0

• r-base >=4.1,<4.2.0a0

• r-broom

• r-car

• r-dplyr

• r-dt >=0.12.0

• r-forcats

• r-heatmaply

• r-knitr

• r-lubridate

• r-magrittr

• r-matrixstats

• r-plotly >=4.9.1

• r-purrr

• r-rcolorbrewer

• r-readr

• r-reshape2

• r-rlang

• r-rmarkdown >=1.9.0

• r-shiny

• r-shinycssloaders

• r-shinydashboard

• r-shinyjs >=2.0.0

• r-shinywidgets

• r-stringr

• r-tibble

• r-tidyr

• r-vegan

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-microbiomeexplorer

and update with:

conda update bioconductor-microbiomeexplorer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-microbiomeexplorer:<tag>

(see bioconductor-microbiomeexplorer/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-microbiomeexplorer/README.html)