- recipe bioconductor-microbiomeexplorer
Microbiome Exploration App
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/microbiomeExplorer.html
- License
MIT + file LICENSE
- Recipe
The MicrobiomeExplorer R package is designed to facilitate the analysis and visualization of marker-gene survey feature data. It allows a user to perform and visualize typical microbiome analytical workflows either through the command line or an interactive Shiny application included with the package. In addition to applying common analytical workflows the application enables automated analysis report generation.
- package bioconductor-microbiomeexplorer¶
-
- Versions
1.4.0-0
,1.2.0-0
,1.0.1-1
,1.0.1-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biomformat
>=1.22.0,<1.23.0
bioconductor-deseq2
>=1.34.0,<1.35.0
bioconductor-limma
>=3.50.0,<3.51.0
bioconductor-metagenomeseq
>=1.36.0,<1.37.0
r-base
>=4.1,<4.2.0a0
r-dt
>=0.12.0
r-plotly
>=4.9.1
r-rmarkdown
>=1.9.0
r-shinyjs
>=2.0.0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-microbiomeexplorer
and update with:
conda update bioconductor-microbiomeexplorer
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-microbiomeexplorer:<tag>
(see bioconductor-microbiomeexplorer/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-microbiomeexplorer/README.html)