recipe bioconductor-midashla

R package for immunogenomics data handling and association analysis

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/midasHLA.html

License:

MIT + file LICENCE

Recipe:

/bioconductor-midashla/meta.yaml

MiDAS is a R package for immunogenetics data transformation and statistical analysis. MiDAS accepts input data in the form of HLA alleles and KIR types, and can transform it into biologically meaningful variables, enabling HLA amino acid fine mapping, analyses of HLA evolutionary divergence, KIR gene presence, as well as validated HLA-KIR interactions. Further, it allows comprehensive statistical association analysis workflows with phenotypes of diverse measurement scales. MiDAS closes a gap between the inference of immunogenetic variation and its efficient utilization to make relevant discoveries related to T cell, Natural Killer cell, and disease biology.

package bioconductor-midashla

Versions:

1.2.0-0,  1.0.0-0

Depends:

• bioconductor-multiassayexperiment >=1.20.0,<1.21.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-assertthat >=0.2.0

• r-base >=4.1,<4.2.0a0

• r-broom >=0.5.1

• r-dplyr >=0.8.0.1

• r-formattable >=0.2.0.1

• r-hardyweinberg >=1.6.3

• r-kableextra >=1.1.0

• r-knitr >=1.21

• r-magrittr >=1.5

• r-qdaptools >=1.3.3

• r-rlang >=0.3.1

• r-stringi >=1.2.4

• r-tibble >=2.0.1

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-midashla

and update with:

conda update bioconductor-midashla

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-midashla:<tag>

(see bioconductor-midashla/tags for valid values for <tag>)

Download stats

Link to this page

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