recipe bioconductor-mira

MIRA measures the degree of “dip” in methylation level surrounding a regulatory site of interest, such as a transcription factor binding site, for instances of that type of site across the genome which can then be used to infer regulatory activity.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/MIRA.html

License

GPL-3

Recipe

/bioconductor-mira/meta.yaml

package bioconductor-mira

Versions

1.4.0-0

Depends

• bioconductor-biobase >=2.42.0,<2.43.0

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-bsseq >=1.18.0,<1.19.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• r-base >=3.5.1,<3.5.2.0a0

• r-data.table

• r-ggplot2

Required By

• bioconductor-cocoa

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mira

and update with:

conda update bioconductor-mira

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mira:<tag>

(see bioconductor-mira/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mira/README.html)