recipe bioconductor-mira

Methylation-Based Inference of Regulatory Activity

Homepage

https://bioconductor.org/packages/3.14/bioc/html/MIRA.html

License

GPL-3

Recipe

/bioconductor-mira/meta.yaml

DNA methylation contains information about the regulatory state of the cell. MIRA aggregates genome-scale DNA methylation data into a DNA methylation profile for a given region set with shared biological annotation. Using this profile, MIRA infers and scores the collective regulatory activity for the region set. MIRA facilitates regulatory analysis in situations where classical regulatory assays would be difficult and allows public sources of region sets to be leveraged for novel insight into the regulatory state of DNA methylation datasets.

package bioconductor-mira

Versions

1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-bsseq >=1.30.0,<1.31.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• r-base >=4.1,<4.2.0a0

• r-data.table

• r-ggplot2

Required By

• bioconductor-cocoa

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mira

and update with:

conda update bioconductor-mira

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mira:<tag>

(see bioconductor-mira/tags for valid values for <tag>)

Download stats

Link to this page

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