recipe bioconductor-mirintegrator

Integrating microRNA expression into signaling pathways for pathway analysis

Homepage

https://bioconductor.org/packages/3.12/bioc/html/mirIntegrator.html

License

GPL (>=3)

Recipe

/bioconductor-mirintegrator/meta.yaml

Links

biotools: mirintegrator, doi: 10.1038/srep29251

Tools for augmenting signaling pathways to perform pathway analysis of microRNA and mRNA expression levels.

package bioconductor-mirintegrator

Versions

1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0

Depends

• bioconductor-annotationdbi >=1.52.0,<1.53.0

• bioconductor-graph >=1.68.0,<1.69.0

• bioconductor-org.hs.eg.db >=3.12.0,<3.13.0

• bioconductor-rgraphviz >=2.34.0,<2.35.0

• bioconductor-rontotools >=2.18.0,<2.19.0

• r-base >=4.0,<4.1.0a0

• r-ggplot2

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mirintegrator

and update with:

conda update bioconductor-mirintegrator

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mirintegrator:<tag>

(see bioconductor-mirintegrator/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mirintegrator/README.html)