recipe bioconductor-mirlab

Dry lab for exploring miRNA-mRNA relationships

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/miRLAB.html

License:

GPL (>=2)

Recipe:

/bioconductor-mirlab/meta.yaml

Provide tools exploring miRNA-mRNA relationships, including popular miRNA target prediction methods, ensemble methods that integrate individual methods, functions to get data from online resources, functions to validate the results, and functions to conduct enrichment analyses.

package bioconductor-mirlab

Versions:

1.24.0-0,  1.22.0-0

Depends:

• bioconductor-category >=2.60.0,<2.61.0

• bioconductor-ctc >=1.68.0,<1.69.0

• bioconductor-gostats >=2.60.0,<2.61.0

• bioconductor-impute >=1.68.0,<1.69.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-org.hs.eg.db >=3.14.0,<3.15.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• bioconductor-tcgabiolinks >=2.22.0,<2.23.0

• r-base >=4.1,<4.2.0a0

• r-dplyr

• r-energy

• r-entropy

• r-glmnet

• r-gplots

• r-hmisc

• r-httr

• r-invariantcausalprediction

• r-pcalg

• r-rcurl

• r-stringr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-mirlab

and update with:

conda update bioconductor-mirlab

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mirlab:<tag>

(see bioconductor-mirlab/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mirlab/README.html)