- recipe bioconductor-missrows
Handling Missing Individuals in Multi-Omics Data Integration
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/missRows.html
- License:
Artistic-2.0
- Recipe:
The missRows package implements the MI-MFA method to deal with missing individuals ('biological units') in multi-omics data integration. The MI-MFA method generates multiple imputed datasets from a Multiple Factor Analysis model, then the yield results are combined in a single consensus solution. The package provides functions for estimating coordinates of individuals and variables, imputing missing individuals, and various diagnostic plots to inspect the pattern of missingness and visualize the uncertainty due to missing values.
- package bioconductor-missrows¶
-
- Versions:
1.14.0-0
,1.12.0-0
,1.10.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.2.0-0
- Depends:
bioconductor-multiassayexperiment
>=1.20.0,<1.21.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-missrows
and update with:
conda update bioconductor-missrows
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-missrows:<tag>
(see bioconductor-missrows/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-missrows/README.html)