recipe bioconductor-mmappr2

Mutation Mapping Analysis Pipeline for Pooled RNA-Seq

Homepage

https://bioconductor.org/packages/3.11/bioc/html/MMAPPR2.html

License

GPL-3

Recipe

/bioconductor-mmappr2/meta.yaml

MMAPPR2 maps mutations resulting from pooled RNA-seq data from the F2 cross of forward genetic screens. Its predecessor is described in a paper published in Genome Research (Hill et al. 2013). MMAPPR2 accepts aligned BAM files as well as a reference genome as input, identifies loci of high sequence disparity between the control and mutant RNA sequences, predicts variant effects using Ensembl’s Variant Effect Predictor, and outputs a ranked list of candidate mutations.

package bioconductor-mmappr2

(downloads) docker_bioconductor-mmappr2

Versions

1.2.0-01.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mmappr2

and update with:

conda update bioconductor-mmappr2

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mmappr2:<tag>

(see bioconductor-mmappr2/tags for valid values for <tag>)