- recipe bioconductor-mmdiff2
Statistical Testing for ChIP-Seq data sets
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/MMDiff2.html
- License
Artistic-2.0
- Recipe
- Links
biotools: mmdiff2, doi: 10.1038/nmeth.3252
This package detects statistically significant differences between read enrichment profiles in different ChIP-Seq samples. To take advantage of shape differences it uses Kernel methods (Maximum Mean Discrepancy, MMD).
- package bioconductor-mmdiff2¶
-
- Versions
1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.10.0-0
,1.8.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-bsgenome
>=1.62.0,<1.63.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-mmdiff2
and update with:
conda update bioconductor-mmdiff2
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-mmdiff2:<tag>
(see bioconductor-mmdiff2/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-mmdiff2/README.html)