recipe bioconductor-mobilerna

mobileRNA: Investigate the RNA mobilome & population-scale changes

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/mobileRNA.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-mobilerna/meta.yaml

Genomic analysis can be utilised to identify differences between RNA populations in two conditions, both in production and abundance. This includes the identification of RNAs produced by multiple genomes within a biological system. For example, RNA produced by pathogens within a host or mobile RNAs in plant graft systems. The mobileRNA package provides methods to pre-process, analyse and visualise the sRNA and mRNA populations based on the premise of mapping reads to all genotypes at the same time.

package bioconductor-mobilerna

(downloads) docker_bioconductor-mobilerna

versions:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-mobilerna

and update with::

   mamba update bioconductor-mobilerna

To create a new environment, run:

mamba create --name myenvname bioconductor-mobilerna

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-mobilerna:<tag>

(see `bioconductor-mobilerna/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mobilerna/README.html)