- recipe bioconductor-monalisa
Binned Motif Enrichment Analysis and Visualization
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/monaLisa.html
- License
GPL-3
- Recipe
Useful functions to work with sequence motifs in the analysis of genomics data. These include methods to annotate genomic regions or sequences with predicted motif hits and to identify motifs that drive observed changes in accessibility or expression. Functions to produce informative visualizations of the obtained results are also provided.
- package bioconductor-monalisa¶
-
- Versions
1.0.0-0
- Depends
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-bsgenome
>=1.62.0,<1.63.0
bioconductor-complexheatmap
>=2.10.0,<2.11.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
bioconductor-tfbstools
>=1.32.0,<1.33.0
bioconductor-xvector
>=0.34.0,<0.35.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-monalisa
and update with:
conda update bioconductor-monalisa
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-monalisa:<tag>
(see bioconductor-monalisa/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-monalisa/README.html)