recipe bioconductor-mosaics

This package provides functions for fitting MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data of transcription factor binding and histone modification.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/mosaics.html

License

GPL (>= 2)

Recipe

/bioconductor-mosaics/meta.yaml

Links

biotools: mosaics, doi: 10.1198/jasa.2011.ap09706

package bioconductor-mosaics

Versions

2.20.0-0, 2.18.0-0, 2.16.0-0, 2.14.0-0, 2.10.0-0, 2.4.1-0

Depends

• bioconductor-genomeinfodb >=1.18.0,<1.19.0

• bioconductor-genomicalignments >=1.18.0,<1.19.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-rsamtools >=1.34.0,<1.35.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• r-base >=3.5.1,<3.5.2.0a0

• r-lattice

• r-mass

• r-rcpp

Required By

• bioconductor-jmosaics

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mosaics

and update with:

conda update bioconductor-mosaics

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mosaics:<tag>

(see bioconductor-mosaics/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mosaics/README.html)