- recipe bioconductor-mosaics
MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/mosaics.html
- License:
GPL (>= 2)
- Recipe:
- Links:
biotools: mosaics, doi: 10.1198/jasa.2011.ap09706
This package provides functions for fitting MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data of transcription factor binding and histone modification.
- package bioconductor-mosaics¶
-
- Versions:
2.36.0-0
,2.32.0-2
,2.32.0-1
,2.32.0-0
,2.30.0-0
,2.28.0-0
,2.26.0-0
,2.24.0-0
,2.22.0-1
,2.36.0-0
,2.32.0-2
,2.32.0-1
,2.32.0-0
,2.30.0-0
,2.28.0-0
,2.26.0-0
,2.24.0-0
,2.22.0-1
,2.20.0-0
,2.18.0-0
,2.16.0-0
,2.14.0-0
,2.10.0-0
,2.4.1-0
- Depends:
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicalignments
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
perl
>=5.32.1,<5.33.0a0 *_perl5
perl
>=5.6.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-mosaics
and update with:
conda update bioconductor-mosaics
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-mosaics:<tag>
(see bioconductor-mosaics/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-mosaics/README.html)