recipe bioconductor-mosaics

MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)

Homepage

https://bioconductor.org/packages/3.11/bioc/html/mosaics.html

License

GPL (>= 2)

Recipe

/bioconductor-mosaics/meta.yaml

Links

biotools: mosaics, doi: 10.1198/jasa.2011.ap09706

This package provides functions for fitting MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data of transcription factor binding and histone modification.

package bioconductor-mosaics

Versions

2.26.0-0,  2.24.0-0,  2.22.0-1,  2.20.0-0,  2.18.0-0,  2.16.0-0,  2.14.0-0,  2.10.0-0,  2.4.1-0

Depends

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-genomicalignments >=1.24.0,<1.25.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-rsamtools >=2.4.0,<2.5.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.3.0

• liblapack >=3.8.0,<3.9.0a0

• libstdcxx-ng >=7.3.0

• perl >=5.26.2,<5.26.3.0a0

• r-base >=4.0,<4.1.0a0

• r-lattice

• r-mass

• r-rcpp

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mosaics

and update with:

conda update bioconductor-mosaics

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mosaics:<tag>

(see bioconductor-mosaics/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mosaics/README.html)