- recipe bioconductor-mosaicsexample
Example data for the mosaics package, which implements MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data for transcription factor binding and histone modification
- Homepage:
https://bioconductor.org/packages/3.16/data/experiment/html/mosaicsExample.html
- License:
GPL (>= 2)
- Recipe:
Data for the mosaics package, consisting of (1) chromosome 22 ChIP and control sample data from a ChIP-seq experiment of STAT1 binding and H3K4me3 modification in MCF7 cell line from ENCODE database (HG19) and (2) chromosome 21 ChIP and control sample data from a ChIP-seq experiment of STAT1 binding, with mappability, GC content, and sequence ambiguity scores of human genome HG18.
- package bioconductor-mosaicsexample¶
-
- Versions:
1.35.0-0
,1.32.0-1
,1.32.0-0
,1.30.0-0
,1.28.0-1
,1.28.0-0
,1.27.0-0
,1.26.0-0
,1.24.0-0
,1.35.0-0
,1.32.0-1
,1.32.0-0
,1.30.0-0
,1.28.0-1
,1.28.0-0
,1.27.0-0
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.22.0-0
,1.20.0-0
- Depends:
bioconductor-data-packages
>=20221103
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-mosaicsexample
and update with:
conda update bioconductor-mosaicsexample
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-mosaicsexample:<tag>
(see bioconductor-mosaicsexample/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-mosaicsexample/README.html)