recipe bioconductor-mosaicsexample

Example data for the mosaics package, which implements MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data for transcription factor binding and histone modification

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/mosaicsExample.html

License:

GPL (>= 2)

Recipe:

/bioconductor-mosaicsexample/meta.yaml

Data for the mosaics package, consisting of (1) chromosome 22 ChIP and control sample data from a ChIP-seq experiment of STAT1 binding and H3K4me3 modification in MCF7 cell line from ENCODE database (HG19) and (2) chromosome 21 ChIP and control sample data from a ChIP-seq experiment of STAT1 binding, with mappability, GC content, and sequence ambiguity scores of human genome HG18.

package bioconductor-mosaicsexample

(downloads) docker_bioconductor-mosaicsexample

Versions:
1.35.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.27.0-0,  1.26.0-0,  1.24.0-0, 

1.35.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.27.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-mosaicsexample

and update with:

conda update bioconductor-mosaicsexample

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mosaicsexample:<tag>

(see bioconductor-mosaicsexample/tags for valid values for <tag>)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mosaicsexample/README.html)