- recipe bioconductor-motifdb
An Annotated Collection of Protein-DNA Binding Sequence Motifs
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/MotifDb.html
- License:
Artistic-2.0 | file LICENSE
- Recipe:
- Links:
biotools: motifdb, doi: 10.1038/nmeth.3252
More than 9900 annotated position frequency matrices from 14 public sources, for multiple organisms.
- package bioconductor-motifdb¶
-
- Versions:
1.40.0-0
,1.36.0-0
,1.34.0-0
,1.32.0-1
,1.32.0-0
,1.30.0-0
,1.28.0-0
,1.26.0-1
,1.24.1-0
,1.40.0-0
,1.36.0-0
,1.34.0-0
,1.32.0-1
,1.32.0-0
,1.30.0-0
,1.28.0-0
,1.26.0-1
,1.24.1-0
,1.22.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-motifdb
and update with:
conda update bioconductor-motifdb
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-motifdb:<tag>
(see bioconductor-motifdb/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-motifdb/README.html)