recipe bioconductor-motifdb

An Annotated Collection of Protein-DNA Binding Sequence Motifs

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/MotifDb.html

License:

Artistic-2.0 | file LICENSE

Recipe:

/bioconductor-motifdb/meta.yaml

Links:

biotools: motifdb, doi: 10.1038/nmeth.3252

More than 9900 annotated position frequency matrices from 14 public sources, for multiple organisms.

package bioconductor-motifdb

Versions:

1.40.0-0,  1.36.0-0,  1.34.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.24.1-0, 

1.40.0-0,  1.36.0-0,  1.34.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.24.1-0,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-splitstackshape

Required By:

• bioconductor-rtrmui

• bioconductor-trena

• bioconductor-motifbreakr

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-motifdb

and update with:

conda update bioconductor-motifdb

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-motifdb:<tag>

(see bioconductor-motifdb/tags for valid values for <tag>)

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