recipe bioconductor-motifmatchr

Fast Motif Matching in R

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/motifmatchr.html

License:

GPL-3 + file LICENSE

Recipe:

/bioconductor-motifmatchr/meta.yaml

Quickly find motif matches for many motifs and many sequences. Wraps C++ code from the MOODS motif calling library, which was developed by Pasi Rastas, Janne Korhonen, and Petri Martinmäki.

package bioconductor-motifmatchr

Versions:

1.20.0-0,  1.16.0-2,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0, 

1.20.0-0,  1.16.0-2,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.0-0

Depends:

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-tfbstools >=1.36.0,<1.37.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-matrix

• r-rcpp

• r-rcpparmadillo

Required By:

• bioconductor-spatzie

• bioconductor-enhancerhomologsearch

• stream_atac

• bioconductor-atacseqtfea

• bioconductor-esatac

• bioconductor-pagerank

• bioconductor-enrichtf

• bioconductor-ataccogaps

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-motifmatchr

and update with:

conda update bioconductor-motifmatchr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-motifmatchr:<tag>

(see bioconductor-motifmatchr/tags for valid values for <tag>)

Download stats

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-motifmatchr/README.html)