recipe bioconductor-motifmatchr

Fast Motif Matching in R

Homepage

https://bioconductor.org/packages/3.11/bioc/html/motifmatchr.html

License

GPL-3 + file LICENSE

Recipe

/bioconductor-motifmatchr/meta.yaml

Quickly find motif matches for many motifs and many sequences. Wraps C++ code from the MOODS motif calling library, which was developed by Pasi Rastas, Janne Korhonen, and Petri Martinmäki.

package bioconductor-motifmatchr

Versions

1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.0-0

Depends

• bioconductor-biostrings >=2.56.0,<2.57.0

• bioconductor-bsgenome >=1.56.0,<1.57.0

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-rsamtools >=2.4.0,<2.5.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• bioconductor-tfbstools >=1.26.0,<1.27.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.3.0

• liblapack >=3.8.0,<3.9.0a0

• libstdcxx-ng >=7.3.0

• r-base >=4.0,<4.1.0a0

• r-matrix

• r-rcpp

• r-rcpparmadillo

Required By

• bioconductor-esatac

• bioconductor-enrichtf

• stream_atac

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-motifmatchr

and update with:

conda update bioconductor-motifmatchr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-motifmatchr:<tag>

(see bioconductor-motifmatchr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-motifmatchr/README.html)