recipe bioconductor-motifmatchr

Fast Motif Matching in R

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/motifmatchr.html

License:

GPL-3 + file LICENSE

Recipe:

/bioconductor-motifmatchr/meta.yaml

Quickly find motif matches for many motifs and many sequences. Wraps C++ code from the MOODS motif calling library, which was developed by Pasi Rastas, Janne Korhonen, and Petri Martinmäki.

package bioconductor-motifmatchr

Versions:

1.16.0-2,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1, 

1.16.0-2,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.0-0

Depends:

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-bsgenome >=1.62.0,<1.63.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-rsamtools >=2.10.0,<2.11.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• bioconductor-tfbstools >=1.32.0,<1.33.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.1,<4.2.0a0

• r-matrix

• r-rcpp

• r-rcpparmadillo

Required By:

• bioconductor-enhancerhomologsearch

• bioconductor-esatac

• stream_atac

• bioconductor-enrichtf

• bioconductor-spatzie

• bioconductor-pagerank

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-motifmatchr

and update with:

conda update bioconductor-motifmatchr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-motifmatchr:<tag>

(see bioconductor-motifmatchr/tags for valid values for <tag>)

Download stats

Link to this page

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