recipe bioconductor-motifmatchr

Quickly find motif matches for many motifs and many sequences. Wraps C++ code from the MOODS motif calling library, which was developed by Pasi Rastas, Janne Korhonen, and Petri Martinmäki.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/motifmatchr.html

License

GPL-3 + file LICENSE

Recipe

/bioconductor-motifmatchr/meta.yaml

package bioconductor-motifmatchr

Versions

1.4.0-0

Depends

• bioconductor-biostrings >=2.50.0,<2.51.0

• bioconductor-bsgenome >=1.50.0,<1.51.0

• bioconductor-genomeinfodb >=1.18.0,<1.19.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-rsamtools >=1.34.0,<1.35.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• bioconductor-summarizedexperiment >=1.12.0,<1.13.0

• bioconductor-tfbstools >=1.20.0,<1.21.0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• r-base >=3.5.1,<3.5.2.0a0

• r-matrix

• r-rcpp

• r-rcpparmadillo

Required By

• bioconductor-esatac

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-motifmatchr

and update with:

conda update bioconductor-motifmatchr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-motifmatchr:<tag>

(see bioconductor-motifmatchr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-motifmatchr/README.html)