recipe bioconductor-motifstack

Plot stacked logos for single or multiple DNA, RNA and amino acid sequence

Homepage

https://bioconductor.org/packages/3.11/bioc/html/motifStack.html

License

GPL (>= 2)

Recipe

/bioconductor-motifstack/meta.yaml

Links

biotools: motifstack, doi: 10.1038/nmeth.3252

The motifStack package is designed for graphic representation of multiple motifs with different similarity scores. It works with both DNA/RNA sequence motif and amino acid sequence motif. In addition, it provides the flexibility for users to customize the graphic parameters such as the font type and symbol colors.

package bioconductor-motifstack

Versions

1.32.0-0, 1.30.0-0, 1.28.0-1, 1.26.0-1, 1.26.0-0, 1.24.1-0, 1.22.0-0, 1.20.1-0, 1.18.0-0

Depends

• bioconductor-biostrings >=2.56.0,<2.57.0

• bioconductor-motiv >=1.43.0,<1.44.0

• r-ade4

• r-base >=4.0,<4.1.0a0

• r-ggplot2

• r-grimport2

• r-htmlwidgets

• r-scales

• r-xml

Required By

• bioconductor-ribosomeprofilingqc

• bioconductor-atacseqqc

• bioconductor-motifbreakr

• bioconductor-daglogo

• bioconductor-atsnp

• bioconductor-lowmaca

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-motifstack

and update with:

conda update bioconductor-motifstack

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-motifstack:<tag>

(see bioconductor-motifstack/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-motifstack/README.html)