- recipe bioconductor-motifstack
Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/motifStack.html
- License:
GPL (>= 2)
- Recipe:
- Links:
biotools: motifstack, doi: 10.1038/nmeth.3252
The motifStack package is designed for graphic representation of multiple motifs with different similarity scores. It works with both DNA/RNA sequence motif and amino acid sequence motif. In addition, it provides the flexibility for users to customize the graphic parameters such as the font type and symbol colors.
- package bioconductor-motifstack¶
-
- Versions:
1.38.0-0
,1.36.0-0
,1.34.0-1
,1.34.0-0
,1.32.0-0
,1.30.0-0
,1.28.0-1
,1.26.0-1
,1.26.0-0
,1.38.0-0
,1.36.0-0
,1.34.0-1
,1.34.0-0
,1.32.0-0
,1.30.0-0
,1.28.0-1
,1.26.0-1
,1.26.0-0
,1.24.1-0
,1.22.0-0
,1.20.1-0
,1.18.0-0
- Depends:
bioconductor-biostrings
>=2.62.0,<2.63.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-motifstack
and update with:
conda update bioconductor-motifstack
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-motifstack:<tag>
(see bioconductor-motifstack/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-motifstack/README.html)