recipe bioconductor-mousethymusageing

Single-cell Transcriptomics Data of the Ageing Mouse Thymus

Homepage

https://bioconductor.org/packages/3.14/data/experiment/html/MouseThymusAgeing.html

License

GPL-3

Recipe

/bioconductor-mousethymusageing/meta.yaml

This package provides data access to counts matrices and meta-data for single-cell RNA sequencing data of thymic epithlial cells across mouse ageing using SMARTseq2 and 10X Genommics chemistries. Access is provided as a data package via ExperimentHub. It is designed to facilitate the re-use of data from Baran-Gale _et al._ in a consistent format that includes relevant and informative meta-data.

package bioconductor-mousethymusageing

Versions

1.2.0-0,  1.0.0-0

Depends

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-experimenthub >=2.2.0,<2.3.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• curl >=7.79.1,<8.0a0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mousethymusageing

and update with:

conda update bioconductor-mousethymusageing

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mousethymusageing:<tag>

(see bioconductor-mousethymusageing/tags for valid values for <tag>)

Download stats

Link to this page

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