recipe bioconductor-msgbsr

msgbsR: methylation sensitive genotyping by sequencing (MS-GBS) R functions

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/msgbsR.html

License:

GPL-2

Recipe:

/bioconductor-msgbsr/meta.yaml

Pipeline for the anaysis of a MS-GBS experiment.

package bioconductor-msgbsr

Versions:

1.22.0-0,  1.18.0-0,  1.16.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.6.0-0

Depends:

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-easyrnaseq >=2.34.0,<2.35.0

• bioconductor-edger >=3.40.0,<3.41.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-ggbio >=1.46.0,<1.47.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-ggplot2

• r-plyr

• r-r.utils

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-msgbsr

and update with:

conda update bioconductor-msgbsr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-msgbsr:<tag>

(see bioconductor-msgbsr/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-msgbsr/README.html)