recipe bioconductor-msigdb

An ExperimentHub Package for the Molecular Signatures Database (MSigDB)

Homepage

https://bioconductor.org/packages/3.14/data/experiment/html/msigdb.html

License

CC BY 4.0

Recipe

/bioconductor-msigdb/meta.yaml

This package provides the Molecular Signatures Database (MSigDB) in a R accessible objects. Signatures are stored in GeneSet class objects form the GSEABase package and the entire database is stored in a GeneSetCollection object. These data are then hosted on the ExperimentHub. Data used in this package was obtained from the MSigDB of the Broad Institute. Metadata for each gene set is stored along with the gene set in the GeneSet class object.

package bioconductor-msigdb

Versions

1.2.0-0,  1.0.0-0

Depends

• bioconductor-annotationdbi >=1.56.0,<1.57.0

• bioconductor-annotationhub >=3.2.0,<3.3.0

• bioconductor-experimenthub >=2.2.0,<2.3.0

• bioconductor-gseabase >=1.56.0,<1.57.0

• bioconductor-org.hs.eg.db >=3.14.0,<3.15.0

• bioconductor-org.mm.eg.db >=3.14.0,<3.15.0

• curl >=7.79.1,<8.0a0

• r-base >=4.1,<4.2.0a0

Required By

• bioconductor-visse

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-msigdb

and update with:

conda update bioconductor-msigdb

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-msigdb:<tag>

(see bioconductor-msigdb/tags for valid values for <tag>)

Download stats

Link to this page

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