recipe bioconductor-msimpute

Imputation of label-free mass spectrometry peptides

Homepage

https://bioconductor.org/packages/3.14/bioc/html/msImpute.html

License

GPL (>=2)

Recipe

/bioconductor-msimpute/meta.yaml

MsImpute is a package for imputation of peptide intensity in proteomics experiments. It additionally contains tools for MAR/MNAR diagnosis and assessment of distortions to the probability distribution of the data post imputation. The missing values are imputed by low-rank approximation of the underlying data matrix if they are MAR (method = "v2"), by Barycenter approach if missingness is MNAR ("v2-mnar"), or by Peptide Identity Propagation (PIP).

package bioconductor-msimpute

(downloads) docker_bioconductor-msimpute

Versions

1.4.0-01.2.0-01.0.0-11.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-msimpute

and update with:

conda update bioconductor-msimpute

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-msimpute:<tag>

(see bioconductor-msimpute/tags for valid values for <tag>)

Download stats