recipe bioconductor-msmstests

LC-MS/MS Differential Expression Tests

Homepage

https://bioconductor.org/packages/3.10/bioc/html/msmsTests.html

License

GPL-2

Recipe

/bioconductor-msmstests/meta.yaml

Statistical tests for label-free LC-MS/MS data by spectral counts, to discover differentially expressed proteins between two biological conditions. Three tests are available: Poisson GLM regression, quasi-likelihood GLM regression, and the negative binomial of the edgeR package.The three models admit blocking factors to control for nuissance variables.To assure a good level of reproducibility a post-test filter is available, where we may set the minimum effect size considered biologicaly relevant, and the minimum expression of the most abundant condition.

package bioconductor-msmstests

(downloads) docker_bioconductor-msmstests

Versions

1.24.0-0, 1.22.0-1, 1.20.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-msmstests

and update with:

conda update bioconductor-msmstests

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-msmstests:<tag>

(see bioconductor-msmstests/tags for valid values for <tag>)