- recipe bioconductor-msstatsptm
Statistical Characterization of Post-translational Modifications
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/MSstatsPTM.html
- License:
Artistic-2.0
- Recipe:
MSstatsPTM provides general statistical methods for quantitative characterization of post-translational modifications (PTMs). Supports DDA, DIA, SRM, and tandem mass tag (TMT) labeling. Typically, the analysis involves the quantification of PTM sites (i.e., modified residues) and their corresponding proteins, as well as the integration of the quantification results. MSstatsPTM provides functions for summarization, estimation of PTM site abundance, and detection of changes in PTMs across experimental conditions.
- package bioconductor-msstatsptm¶
-
- Versions:
2.0.0-1
,2.0.0-0
,1.4.2-1
,1.4.2-0
,1.4.0-0
,1.2.2-0
,1.0.0-2
,1.0.0-1
- Depends:
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-msstats
>=4.6.0,<4.7.0
bioconductor-msstatsconvert
>=1.8.0,<1.9.0
bioconductor-msstatstmt
>=2.6.0,<2.7.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-msstatsptm
and update with:
conda update bioconductor-msstatsptm
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-msstatsptm:<tag>
(see bioconductor-msstatsptm/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-msstatsptm/README.html)