- recipe bioconductor-msstatstmt
Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/MSstatsTMT.html
- License:
Artistic-2.0
- Recipe:
The package provides statistical tools for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling. It provides multiple functionalities, including aata visualization, protein quantification and normalization, and statistical modeling and inference. Furthermore, it is inter-operable with other data processing tools, such as Proteome Discoverer, MaxQuant, OpenMS and SpectroMine.
- package bioconductor-msstatstmt¶
-
- Versions:
2.6.0-0
,2.2.0-0
,2.0.0-0
,1.8.2-1
,1.8.2-0
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.2.5-0
,2.6.0-0
,2.2.0-0
,2.0.0-0
,1.8.2-1
,1.8.2-0
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.2.5-0
,1.1.2-0
,1.0.0-0
- Depends:
bioconductor-limma
>=3.54.0,<3.55.0
bioconductor-msstats
>=4.6.0,<4.7.0
bioconductor-msstatsconvert
>=1.8.0,<1.9.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-msstatstmt
and update with:
conda update bioconductor-msstatstmt
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-msstatstmt:<tag>
(see bioconductor-msstatstmt/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-msstatstmt/README.html)