recipe bioconductor-mudata

Serialization for MultiAssayExperiment Objects

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/MuData.html

License:

GPL-3

Recipe:

/bioconductor-mudata/meta.yaml

Save MultiAssayExperiments to h5mu files supported by muon and mudata. Muon is a Python framework for multimodal omics data analysis. It uses an HDF5-based format for data storage.

package bioconductor-mudata

Versions:

1.2.0-0

Depends:

• bioconductor-delayedarray >=0.24.0,<0.25.0

• bioconductor-multiassayexperiment >=1.24.0,<1.25.0

• bioconductor-rhdf5 >=2.42.0,<2.43.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-matrix

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-mudata

and update with:

conda update bioconductor-mudata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mudata:<tag>

(see bioconductor-mudata/tags for valid values for <tag>)

Download stats

Link to this page

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