recipe bioconductor-multibac

Multiomic Batch effect Correction

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/MultiBaC.html

License:

GPL-3

Recipe:

/bioconductor-multibac/meta.yaml

MultiBaC is a strategy to correct batch effects from multiomic datasets distributed across different labs or data acquisition events. MultiBaC is the first Batch effect correction algorithm that dealing with batch effect correction in multiomics datasets. MultiBaC is able to remove batch effects across different omics generated within separate batches provided that at least one common omic data type is included in all the batches considered.

package bioconductor-multibac

Versions:

1.8.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-2,  1.0.0-1

Depends:

• bioconductor-multiassayexperiment >=1.24.0,<1.25.0

• bioconductor-pcamethods >=1.90.0,<1.91.0

• bioconductor-ropls >=1.30.0,<1.31.0

• r-base >=4.2,<4.3.0a0

• r-ggplot2

• r-matrix

• r-plotrix

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-multibac

and update with:

conda update bioconductor-multibac

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-multibac:<tag>

(see bioconductor-multibac/tags for valid values for <tag>)

Download stats

Link to this page

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