- recipe bioconductor-multicrispr
Multi-locus multi-purpose Crispr/Cas design
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/multicrispr.html
- License
GPL-2
- Recipe
This package is for designing Crispr/Cas9 and Prime Editing experiments. It contains functions to (1) define and transform genomic targets, (2) find spacers (4) count offtarget (mis)matches, and (5) compute Doench2016/2014 targeting efficiency. Care has been taken for multicrispr to scale well towards large target sets, enabling the design of large Crispr/Cas9 libraries.
- package bioconductor-multicrispr¶
-
- Versions
1.4.0-0
,1.2.0-0
,1.0.0-2
,1.0.0-1
- Depends
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-bsgenome
>=1.62.0,<1.63.0
bioconductor-crisprseek
>=1.34.0,<1.35.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicfeatures
>=1.46.0,<1.47.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-karyoploter
>=1.20.0,<1.21.0
bioconductor-plyranges
>=1.14.0,<1.15.0
bioconductor-rbowtie
>=1.34.0,<1.35.0
bioconductor-rtracklayer
>=1.54.0,<1.55.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-multicrispr
and update with:
conda update bioconductor-multicrispr
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-multicrispr:<tag>
(see bioconductor-multicrispr/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-multicrispr/README.html)