recipe bioconductor-multicrispr

Multi-locus multi-purpose Crispr/Cas design

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/multicrispr.html

License:

GPL-2

Recipe:

/bioconductor-multicrispr/meta.yaml

This package is for designing Crispr/Cas9 and Prime Editing experiments. It contains functions to (1) define and transform genomic targets, (2) find spacers (4) count offtarget (mis)matches, and (5) compute Doench2016/2014 targeting efficiency. Care has been taken for multicrispr to scale well towards large target sets, enabling the design of large Crispr/Cas9 libraries.

package bioconductor-multicrispr

Versions:

1.8.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-2,  1.0.0-1

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-crisprseek >=1.38.0,<1.39.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-karyoploter >=1.24.0,<1.25.0

• bioconductor-plyranges >=1.18.0,<1.19.0

• bioconductor-rbowtie >=1.38.0,<1.39.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• r-assertive

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-ggplot2

• r-magrittr

• r-reticulate

• r-stringi

• r-tidyr

• r-tidyselect

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-multicrispr

and update with:

conda update bioconductor-multicrispr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-multicrispr:<tag>

(see bioconductor-multicrispr/tags for valid values for <tag>)

Download stats

Link to this page

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