recipe bioconductor-multicrispr

Multi-locus multi-purpose Crispr/Cas design

Homepage

https://bioconductor.org/packages/3.14/bioc/html/multicrispr.html

License

GPL-2

Recipe

/bioconductor-multicrispr/meta.yaml

This package is for designing Crispr/Cas9 and Prime Editing experiments. It contains functions to (1) define and transform genomic targets, (2) find spacers (4) count offtarget (mis)matches, and (5) compute Doench2016/2014 targeting efficiency. Care has been taken for multicrispr to scale well towards large target sets, enabling the design of large Crispr/Cas9 libraries.

package bioconductor-multicrispr

Versions

1.4.0-0,  1.2.0-0,  1.0.0-2,  1.0.0-1

Depends

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-bsgenome >=1.62.0,<1.63.0

• bioconductor-crisprseek >=1.34.0,<1.35.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicfeatures >=1.46.0,<1.47.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-karyoploter >=1.20.0,<1.21.0

• bioconductor-plyranges >=1.14.0,<1.15.0

• bioconductor-rbowtie >=1.34.0,<1.35.0

• bioconductor-rtracklayer >=1.54.0,<1.55.0

• r-assertive

• r-base >=4.1,<4.2.0a0

• r-data.table

• r-ggplot2

• r-magrittr

• r-reticulate

• r-stringi

• r-tidyr

• r-tidyselect

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-multicrispr

and update with:

conda update bioconductor-multicrispr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-multicrispr:<tag>

(see bioconductor-multicrispr/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-multicrispr/README.html)