recipe bioconductor-multigsea

Combining GSEA-based pathway enrichment with multi omics data integration

Homepage

https://bioconductor.org/packages/3.14/bioc/html/multiGSEA.html

License

GPL-3

Recipe

/bioconductor-multigsea/meta.yaml

Extracted features from pathways derived from 8 different databases (KEGG, Reactome, Biocarta, etc.) can be used on transcriptomic, proteomic, and/or metabolomic level to calculate a combined GSEA-based enrichment score.

package bioconductor-multigsea

Versions

1.4.0-0,  1.2.0-0,  1.0.1-1,  1.0.1-0,  1.0.0-1

Depends

• bioconductor-annotationdbi >=1.56.0,<1.57.0

• bioconductor-fgsea >=1.20.0,<1.21.0

• bioconductor-graphite >=1.40.0,<1.41.0

• r-base >=4.1,<4.2.0a0

• r-dplyr

• r-magrittr

• r-metap

• r-rappdirs

• r-rlang

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-multigsea

and update with:

conda update bioconductor-multigsea

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-multigsea:<tag>

(see bioconductor-multigsea/tags for valid values for <tag>)

Download stats

Link to this page

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