recipe bioconductor-multigsea

Combining GSEA-based pathway enrichment with multi omics data integration

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/multiGSEA.html

License:

GPL-3

Recipe:

/bioconductor-multigsea/meta.yaml

Extracted features from pathways derived from 8 different databases (KEGG, Reactome, Biocarta, etc.) can be used on transcriptomic, proteomic, and/or metabolomic level to calculate a combined GSEA-based enrichment score.

package bioconductor-multigsea

Versions:

1.8.0-0,  1.4.0-0,  1.2.0-0,  1.0.1-1,  1.0.1-0,  1.0.0-1

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-fgsea >=1.24.0,<1.25.0

• bioconductor-graphite >=1.44.0,<1.45.0

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-magrittr

• r-metap

• r-rappdirs

• r-rlang

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-multigsea

and update with:

conda update bioconductor-multigsea

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-multigsea:<tag>

(see bioconductor-multigsea/tags for valid values for <tag>)

Download stats

Link to this page

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