- recipe bioconductor-multigsea
Combining GSEA-based pathway enrichment with multi omics data integration
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/multiGSEA.html
- License
GPL-3
- Recipe
Extracted features from pathways derived from 8 different databases (KEGG, Reactome, Biocarta, etc.) can be used on transcriptomic, proteomic, and/or metabolomic level to calculate a combined GSEA-based enrichment score.
- package bioconductor-multigsea¶
-
- Versions
1.4.0-0
,1.2.0-0
,1.0.1-1
,1.0.1-0
,1.0.0-1
- Depends
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-fgsea
>=1.20.0,<1.21.0
bioconductor-graphite
>=1.40.0,<1.41.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-multigsea
and update with:
conda update bioconductor-multigsea
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-multigsea:<tag>
(see bioconductor-multigsea/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-multigsea/README.html)