recipe bioconductor-mumosa

Multi-Modal Single-Cell Analysis Methods

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/mumosa.html

License:

GPL-3

Recipe:

/bioconductor-mumosa/meta.yaml

Assorted utilities for multi-modal analyses of single-cell datasets. Includes functions to combine multiple modalities for downstream analysis, perform MNN-based batch correction across multiple modalities, and to compute correlations between assay values for different modalities.

package bioconductor-mumosa

Versions:

1.2.0-0,  1.0.0-0

Depends:

• bioconductor-batchelor >=1.10.0,<1.11.0

• bioconductor-beachmat >=2.10.0,<2.11.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biocneighbors >=1.12.0,<1.13.0

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-biocsingular >=1.10.0,<1.11.0

• bioconductor-delayedarray >=0.20.0,<0.21.0

• bioconductor-delayedmatrixstats >=1.16.0,<1.17.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-metapod >=1.2.0,<1.3.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-scaledmatrix >=1.2.0,<1.3.0

• bioconductor-scran >=1.22.0,<1.23.0

• bioconductor-scuttle >=1.4.0,<1.5.0

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-igraph

• r-matrix

• r-uwot

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-mumosa

and update with:

conda update bioconductor-mumosa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mumosa:<tag>

(see bioconductor-mumosa/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mumosa/README.html)