- recipe bioconductor-mumosa
Multi-Modal Single-Cell Analysis Methods
- Homepage:
https://bioconductor.org/packages/3.17/bioc/html/mumosa.html
- License:
GPL-3
- Recipe:
Assorted utilities for multi-modal analyses of single-cell datasets. Includes functions to combine multiple modalities for downstream analysis, perform MNN-based batch correction across multiple modalities, and to compute correlations between assay values for different modalities.
- package bioconductor-mumosa¶
- versions:
1.8.0-0,1.6.0-0,1.2.0-0,1.0.0-0- depends bioconductor-batchelor:
>=1.16.0,<1.17.0- depends bioconductor-beachmat:
>=2.16.0,<2.17.0- depends bioconductor-biocgenerics:
>=0.46.0,<0.47.0- depends bioconductor-biocneighbors:
>=1.18.0,<1.19.0- depends bioconductor-biocparallel:
>=1.34.0,<1.35.0- depends bioconductor-biocsingular:
>=1.16.0,<1.17.0- depends bioconductor-delayedarray:
>=0.26.0,<0.27.0- depends bioconductor-delayedmatrixstats:
>=1.22.0,<1.23.0- depends bioconductor-iranges:
>=2.34.0,<2.35.0- depends bioconductor-metapod:
>=1.8.0,<1.9.0- depends bioconductor-s4vectors:
>=0.38.0,<0.39.0- depends bioconductor-scaledmatrix:
>=1.8.0,<1.9.0- depends bioconductor-scran:
>=1.28.0,<1.29.0- depends bioconductor-scuttle:
>=1.10.0,<1.11.0- depends bioconductor-singlecellexperiment:
>=1.22.0,<1.23.0- depends bioconductor-summarizedexperiment:
>=1.30.0,<1.31.0- depends r-base:
>=4.3,<4.4.0a0- depends r-igraph:
- depends r-matrix:
- depends r-uwot:
- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install bioconductor-mumosa and update with:: mamba update bioconductor-mumosa
To create a new environment, run:
mamba create --name myenvname bioconductor-mumosa
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/bioconductor-mumosa:<tag> (see `bioconductor-mumosa/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-mumosa/README.html)
