recipe bioconductor-mumosa

Multi-Modal Single-Cell Analysis Methods

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/mumosa.html

License:

GPL-3

Recipe:

/bioconductor-mumosa/meta.yaml

Assorted utilities for multi-modal analyses of single-cell datasets. Includes functions to combine multiple modalities for downstream analysis, perform MNN-based batch correction across multiple modalities, and to compute correlations between assay values for different modalities.

package bioconductor-mumosa

Versions:

1.6.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-batchelor >=1.14.0,<1.15.0

• bioconductor-beachmat >=2.14.0,<2.15.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocneighbors >=1.16.0,<1.17.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-biocsingular >=1.14.0,<1.15.0

• bioconductor-delayedarray >=0.24.0,<0.25.0

• bioconductor-delayedmatrixstats >=1.20.0,<1.21.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-metapod >=1.6.0,<1.7.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-scaledmatrix >=1.6.0,<1.7.0

• bioconductor-scran >=1.26.0,<1.27.0

• bioconductor-scuttle >=1.8.0,<1.9.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-igraph

• r-matrix

• r-uwot

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-mumosa

and update with:

conda update bioconductor-mumosa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mumosa:<tag>

(see bioconductor-mumosa/tags for valid values for <tag>)

Download stats

Link to this page

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