recipe bioconductor-mungesumstats

Standardise summary statistics from GWAS

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/MungeSumstats.html

License:

Artistic-2.0

Recipe:

/bioconductor-mungesumstats/meta.yaml

The *MungeSumstats* package is designed to facilitate the standardisation of GWAS summary statistics. It reformats inputted summary statisitics to include SNP, CHR, BP and can look up these values if any are missing. It also pefrorms dozens of QC and filtering steps to ensure high data quality and minimise inter-study differences.

package bioconductor-mungesumstats

Versions:

1.6.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-variantannotation >=1.44.0,<1.45.0

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-dplyr

• r-googleauthr

• r-httr

• r-jsonlite

• r-magrittr

• r-r.utils

• r-rcurl

• r-stringr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-mungesumstats

and update with:

conda update bioconductor-mungesumstats

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mungesumstats:<tag>

(see bioconductor-mungesumstats/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mungesumstats/README.html)