- recipe bioconductor-mungesumstats
Standardise summary statistics from GWAS
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/MungeSumstats.html
- License:
Artistic-2.0
- Recipe:
The *MungeSumstats* package is designed to facilitate the standardisation of GWAS summary statistics. It reformats inputted summary statisitics to include SNP, CHR, BP and can look up these values if any are missing. It also pefrorms dozens of QC and filtering steps to ensure high data quality and minimise inter-study differences.
- package bioconductor-mungesumstats¶
-
- Versions:
1.6.0-0
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-bsgenome
>=1.66.0,<1.67.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-variantannotation
>=1.44.0,<1.45.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-mungesumstats
and update with:
conda update bioconductor-mungesumstats
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-mungesumstats:<tag>
(see bioconductor-mungesumstats/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-mungesumstats/README.html)