- recipe bioconductor-muscat
Multi-sample multi-group scRNA-seq data analysis tools
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/muscat.html
- License
GPL-3
- Recipe
`muscat` provides various methods and visualization tools for DS analysis in multi-sample, multi-group, multi-(cell-)subpopulation scRNA-seq data, including cell-level mixed models and methods based on aggregated “pseudobulk” data, as well as a flexible simulation platform that mimics both single and multi-sample scRNA-seq data.
- package bioconductor-muscat¶
-
- Versions
1.8.0-0
,1.6.0-0
,1.4.0-1
,1.4.0-0
,1.2.0-0
,1.0.0-0
- Depends
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-complexheatmap
>=2.10.0,<2.11.0
bioconductor-deseq2
>=1.34.0,<1.35.0
bioconductor-edger
>=3.36.0,<3.37.0
bioconductor-limma
>=3.50.0,<3.51.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-scater
>=1.22.0,<1.23.0
bioconductor-scuttle
>=1.4.0,<1.5.0
bioconductor-singlecellexperiment
>=1.16.0,<1.17.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
bioconductor-variancepartition
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-muscat
and update with:
conda update bioconductor-muscat
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-muscat:<tag>
(see bioconductor-muscat/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-muscat/README.html)