- recipe bioconductor-mwastools
MWASTools: an integrated pipeline to perform metabolome-wide association studies
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/MWASTools.html
- License:
CC BY-NC-ND 4.0
- Recipe:
MWASTools provides a complete pipeline to perform metabolome-wide association studies. Key functionalities of the package include: quality control analysis of metabonomic data; MWAS using different association models (partial correlations; generalized linear models); model validation using non-parametric bootstrapping; visualization of MWAS results; NMR metabolite identification using STOCSY; and biological interpretation of MWAS results.
- package bioconductor-mwastools¶
-
- Versions:
1.18.0-0
,1.16.0-0
,1.14.0-1
,1.14.0-0
,1.12.0-0
,1.10.0-0
,1.8.0-1
,1.6.0-0
,1.4.0-0
,1.18.0-0
,1.16.0-0
,1.14.0-1
,1.14.0-0
,1.12.0-0
,1.10.0-0
,1.8.0-1
,1.6.0-0
,1.4.0-0
,1.2.0-0
- Depends:
bioconductor-complexheatmap
>=2.10.0,<2.11.0
bioconductor-kegggraph
>=1.54.0,<1.55.0
bioconductor-keggrest
>=1.34.0,<1.35.0
bioconductor-qvalue
>=2.26.0,<2.27.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-mwastools
and update with:
conda update bioconductor-mwastools
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-mwastools:<tag>
(see bioconductor-mwastools/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-mwastools/README.html)