recipe bioconductor-mygene

MyGene.Info_ provides simple-to-use REST web services to query/retrieve gene annotation data. It’s designed with simplicity and performance emphasized. *mygene*, is an easy-to-use R wrapper to access MyGene.Info_ services.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/mygene.html

License

Artistic-2.0

Recipe

/bioconductor-mygene/meta.yaml

Links

biotools: mygene, doi: 10.1101/009333

package bioconductor-mygene

(downloads) docker_bioconductor-mygene

Versions

1.18.0-0, 1.16.2-0, 1.14.0-0

Depends bioconductor-genomicfeatures

>=1.34.0,<1.35.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-hmisc

Depends r-httr

>=0.3

Depends r-jsonlite

>=0.9.7

Depends r-plyr

Depends r-sqldf

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mygene

and update with:

conda update bioconductor-mygene

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mygene:<tag>

(see bioconductor-mygene/tags for valid values for <tag>)