- recipe bioconductor-mzr
parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass spectrometry data)
- Homepage
- License
Artistic-2.0
- Recipe
- Links
biotools: mzr
mzR provides a unified API to the common file formats and parsers available for mass spectrometry data. It comes with a wrapper for the ISB random access parser for mass spectrometry mzXML, mzData and mzML files. The package contains the original code written by the ISB, and a subset of the proteowizard library for mzML and mzIdentML. The netCDF reading code has previously been used in XCMS.
- package bioconductor-mzr¶
-
- Versions
2.28.0-1
,2.28.0-0
,2.26.0-0
,2.24.1-0
,2.24.0-0
,2.22.0-0
,2.20.0-0
,2.18.0-1
,2.16.2-1
,2.28.0-1
,2.28.0-0
,2.26.0-0
,2.24.1-0
,2.24.0-0
,2.22.0-0
,2.20.0-0
,2.18.0-1
,2.16.2-1
,2.16.2-0
,2.16.0-0
,2.12.0-1
,2.10.0-0
,2.6.3-1
,2.6.3-0
,2.4.1-1
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-protgenerics
>=1.26.0,<1.27.0
bioconductor-rhdf5lib
>=1.16.0,<1.17.0
bioconductor-zlibbioc
>=1.40.0,<1.41.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=10.3.0
r-base
>=4.1,<4.2.0a0
r-rcpp
>=0.10.1
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-mzr
and update with:
conda update bioconductor-mzr
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-mzr:<tag>
(see bioconductor-mzr/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
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