recipe bioconductor-mzr

mzR provides a unified API to the common file formats and parsers available for mass spectrometry data. It comes with a wrapper for the ISB random access parser for mass spectrometry mzXML, mzData and mzML files. The package contains the original code written by the ISB, and a subset of the proteowizard library for mzML and mzIdentML. The netCDF reading code has previously been used in XCMS.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/mzR.html

License

Artistic-2.0

Recipe

/bioconductor-mzr/meta.yaml

Links

biotools: mzr

package bioconductor-mzr

Versions

2.16.2-0, 2.16.0-0, 2.12.0-1, 2.10.0-0, 2.6.3-1, 2.6.3-0, 2.4.1-1

Depends

• bioconductor-biobase >=2.42.0,<2.43.0

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-protgenerics >=1.14.0,<1.15.0

• bioconductor-rhdf5lib >=1.4.0,<1.5.0

• bioconductor-zlibbioc >=1.28.0,<1.29.0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• r-base >=3.5.1,<3.5.2.0a0

• r-ncdf4

• r-rcpp >=0.10.1

Required By

• r-probmetab

• bioconductor-msgfgui

• bioconductor-simat

• bioconductor-xcms

• bioconductor-rmassbank

• bioconductor-mspurity

• r-george

• bioconductor-proteomicsannotationhubdata

• bioconductor-yamss

• bioconductor-msnbase

• bioconductor-topdownr

• bioconductor-msnid

• r-msqrob

• bioconductor-pbase

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mzr

and update with:

conda update bioconductor-mzr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mzr:<tag>

(see bioconductor-mzr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mzr/README.html)