- recipe bioconductor-nanomethviz
Visualise methlation data from Oxford Nanopore sequencing
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/NanoMethViz.html
- License
Apache License (>= 2.0)
- Recipe
NanoMethViz is a toolkit for visualising methylation data from Oxford Nanopore sequencing. It can be used to explore methylation patterns from reads derived from Oxford Nanopore direct DNA sequencing with methylation called by callers including nanopolish, f5c and megalodon. The plots in this package allow the visualisation of methylation profiles aggregated over experimental groups and across classes of genomic features.
- package bioconductor-nanomethviz¶
-
- Versions
2.0.0-1
,2.0.0-0
,1.2.0-0
,1.0.0-2
,1.0.0-1
- Depends
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-biocsingular
>=1.10.0,<1.11.0
bioconductor-bsseq
>=1.30.0,<1.31.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-limma
>=3.50.0,<3.51.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
bioconductor-zlibbioc
>=1.40.0,<1.41.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=10.3.0
r-base
>=4.1,<4.2.0a0
r-cpp11
>=0.2.5
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-nanomethviz
and update with:
conda update bioconductor-nanomethviz
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-nanomethviz:<tag>
(see bioconductor-nanomethviz/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-nanomethviz/README.html)