recipe bioconductor-nanotube

An Easy Pipeline for NanoString nCounter Data Analysis

Homepage

https://bioconductor.org/packages/3.14/bioc/html/NanoTube.html

License

GPL-3

Recipe

/bioconductor-nanotube/meta.yaml

NanoTube includes functions for the processing, quality control, analysis, and visualization of NanoString nCounter data. Analysis functions include differential analysis and gene set analysis methods, as well as postprocessing steps to help understand the results. Additional functions are included to enable interoperability with other Bioconductor NanoString data analysis packages.

package bioconductor-nanotube

Versions

1.0.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-fgsea >=1.20.0,<1.21.0

• bioconductor-limma >=3.50.0,<3.51.0

• r-base >=4.1,<4.2.0a0

• r-ggplot2

• r-reshape

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-nanotube

and update with:

conda update bioconductor-nanotube

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-nanotube:<tag>

(see bioconductor-nanotube/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-nanotube/README.html)