- recipe bioconductor-nanotube
An Easy Pipeline for NanoString nCounter Data Analysis
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/NanoTube.html
- License
GPL-3
- Recipe
NanoTube includes functions for the processing, quality control, analysis, and visualization of NanoString nCounter data. Analysis functions include differential analysis and gene set analysis methods, as well as postprocessing steps to help understand the results. Additional functions are included to enable interoperability with other Bioconductor NanoString data analysis packages.
- package bioconductor-nanotube¶
-
- Versions
1.0.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-fgsea
>=1.20.0,<1.21.0
bioconductor-limma
>=3.50.0,<3.51.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-nanotube
and update with:
conda update bioconductor-nanotube
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-nanotube:<tag>
(see bioconductor-nanotube/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-nanotube/README.html)