recipe bioconductor-ncgtw

Alignment of LC-MS Profiles by Neighbor-wise Compound-specific Graphical Time Warping with Misalignment Detection

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/ncGTW.html

License:

GPL-2

Recipe:

/bioconductor-ncgtw/meta.yaml

The purpose of ncGTW is to help XCMS for LC-MS data alignment. Currently, ncGTW can detect the misaligned feature groups by XCMS, and the user can choose to realign these feature groups by ncGTW or not.

package bioconductor-ncgtw

Versions:

1.12.0-0,  1.8.0-2,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-xcms >=3.20.0,<3.21.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-rcpp

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ncgtw

and update with:

conda update bioconductor-ncgtw

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ncgtw:<tag>

(see bioconductor-ncgtw/tags for valid values for <tag>)

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Link to this page

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