-
recipe
bioconductor-ncgtw
Alignment of LC-MS Profiles by Neighbor-wise Compound-specific Graphical Time Warping with Misalignment Detection
- Homepage
- License
GPL-2
- Recipe
The purpose of ncGTW is to help XCMS for LC-MS data alignment. Currently, ncGTW can detect the misaligned feature groups by XCMS, and the user can choose to realign these feature groups by ncGTW or not.
-
package
bioconductor-ncgtw
¶ -
- Versions
1.4.0-0
,1.2.0-0
,1.0.0-0
- Depends
bioconductor-biocparallel
>=1.24.0,<1.25.0
bioconductor-xcms
>=3.12.0,<3.13.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=7.5.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=7.5.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-ncgtw
and update with:
conda update bioconductor-ncgtw
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-ncgtw:<tag>
(see bioconductor-ncgtw/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-ncgtw/README.html)