recipe bioconductor-ncigraph

Provides various methods to load the pathways from the NCI Pathways Database in R graph objects and to re-format them.

Homepage:https://bioconductor.org/packages/3.8/bioc/html/NCIgraph.html License:GPL-3 Recipe:/bioconductor-ncigraph/meta.yaml Links:biotools: ncigraph, doi: 10.1038/nmeth.3252

package bioconductor-ncigraph

Versions:

1.30.0-1, 1.30.0-0, 1.28.0-0, 1.26.0-0, 1.24.0-0

Depends:

• bioconductor-graph >=1.60.0,<1.61.0
• bioconductor-kegggraph >=1.42.0,<1.43.0
• bioconductor-rbgl >=1.58.0,<1.59.0
• bioconductor-rcy3 >=2.2.0,<2.3.0
• r-base >=3.5.1,<3.5.2.0a0
• r-r.methodss3

Required By:

• bioconductor-degraph

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ncigraph

and update with:

conda update bioconductor-ncigraph

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ncigraph:<tag>

(see bioconductor-ncigraph/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ncigraph/README.html)