Package Recipe 'bioconductor-ncigraph'

recipe bioconductor-ncigraph¶

Provides various methods to load the pathways from the NCI Pathways Database in R graph objects and to re-format them.

Homepage: https://bioconductor.org/packages/3.9/bioc/html/NCIgraph.html
License: GPL-3
Recipe: /bioconductor-ncigraph/meta.yaml
Links: biotools: ncigraph, doi: 10.1038/nmeth.3252

package bioconductor-ncigraph¶

Versions: 1.30.0-1, 1.30.0-0, 1.28.0-0, 1.26.0-0, 1.24.0-0
Depends bioconductor-graph: >=1.60.0,<1.61.0
Depends bioconductor-kegggraph: >=1.42.0,<1.43.0
Depends bioconductor-rbgl: >=1.58.0,<1.59.0
Depends bioconductor-rcy3: >=2.2.0,<2.3.0
Depends r-base: >=3.5.1,<3.5.2.0a0
Depends r-r.methodss3
Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ncigraph

and update with:

conda update bioconductor-ncigraph

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ncigraph:<tag>

(see bioconductor-ncigraph/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ncigraph/README.html)