recipe bioconductor-ncigraph

Pathways from the NCI Pathways Database

Homepage

https://bioconductor.org/packages/3.11/bioc/html/NCIgraph.html

License

GPL-3

Recipe

/bioconductor-ncigraph/meta.yaml

Links

biotools: ncigraph, doi: 10.1038/nmeth.3252

Provides various methods to load the pathways from the NCI Pathways Database in R graph objects and to re-format them.

package bioconductor-ncigraph

Versions

1.36.0-0, 1.34.0-0, 1.32.0-1, 1.30.0-1, 1.30.0-0, 1.28.0-0, 1.26.0-0, 1.24.0-0

Depends

• bioconductor-graph >=1.66.0,<1.67.0

• bioconductor-kegggraph >=1.48.0,<1.49.0

• bioconductor-rbgl >=1.64.0,<1.65.0

• bioconductor-rcy3 >=2.8.0,<2.9.0

• r-base >=4.0,<4.1.0a0

• r-r.methodss3

Required By

• bioconductor-degraph

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ncigraph

and update with:

conda update bioconductor-ncigraph

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ncigraph:<tag>

(see bioconductor-ncigraph/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ncigraph/README.html)