recipe bioconductor-ncigraph

Pathways from the NCI Pathways Database

Homepage

https://bioconductor.org/packages/3.14/bioc/html/NCIgraph.html

License

GPL-3

Recipe

/bioconductor-ncigraph/meta.yaml

Links

biotools: ncigraph, doi: 10.1038/nmeth.3252

Provides various methods to load the pathways from the NCI Pathways Database in R graph objects and to re-format them.

package bioconductor-ncigraph

Versions

1.42.0-0,  1.40.0-0,  1.38.0-1,  1.38.0-0,  1.36.0-0,  1.34.0-0,  1.32.0-1,  1.30.0-1,  1.30.0-0, 

1.42.0-0,  1.40.0-0,  1.38.0-1,  1.38.0-0,  1.36.0-0,  1.34.0-0,  1.32.0-1,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-0

Depends

• bioconductor-graph >=1.72.0,<1.73.0

• bioconductor-kegggraph >=1.54.0,<1.55.0

• bioconductor-rbgl >=1.70.0,<1.71.0

• bioconductor-rcy3 >=2.14.0,<2.15.0

• r-base >=4.1,<4.2.0a0

• r-r.methodss3

Required By

• bioconductor-degraph

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ncigraph

and update with:

conda update bioconductor-ncigraph

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ncigraph:<tag>

(see bioconductor-ncigraph/tags for valid values for <tag>)

Download stats

Link to this page

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