- recipe bioconductor-ncigraph
Pathways from the NCI Pathways Database
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/NCIgraph.html
- License
GPL-3
- Recipe
- Links
biotools: ncigraph, doi: 10.1038/nmeth.3252
Provides various methods to load the pathways from the NCI Pathways Database in R graph objects and to re-format them.
- package bioconductor-ncigraph¶
-
- Versions
1.42.0-0
,1.40.0-0
,1.38.0-1
,1.38.0-0
,1.36.0-0
,1.34.0-0
,1.32.0-1
,1.30.0-1
,1.30.0-0
,1.42.0-0
,1.40.0-0
,1.38.0-1
,1.38.0-0
,1.36.0-0
,1.34.0-0
,1.32.0-1
,1.30.0-1
,1.30.0-0
,1.28.0-0
,1.26.0-0
,1.24.0-0
- Depends
bioconductor-graph
>=1.72.0,<1.73.0
bioconductor-kegggraph
>=1.54.0,<1.55.0
bioconductor-rbgl
>=1.70.0,<1.71.0
bioconductor-rcy3
>=2.14.0,<2.15.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-ncigraph
and update with:
conda update bioconductor-ncigraph
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-ncigraph:<tag>
(see bioconductor-ncigraph/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-ncigraph/README.html)