recipe bioconductor-nebulosa

Single-Cell Data Visualisation Using Kernel Gene-Weighted Density Estimation

Homepage

https://bioconductor.org/packages/3.14/bioc/html/Nebulosa.html

License

GPL-3

Recipe

/bioconductor-nebulosa/meta.yaml

This package provides a enhanced visualization of single-cell data based on gene-weighted density estimation. Nebulosa recovers the signal from dropped-out features and allows the inspection of the joint expression from multiple features (e.g. genes). Seurat and SingleCellExperiment objects can be used within Nebulosa.

package bioconductor-nebulosa

Versions

1.4.0-0,  1.2.0-0,  1.0.2-0,  1.0.0-1

Depends

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-ggplot2

• r-ks

• r-matrix

• r-patchwork

• r-seurat

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-nebulosa

and update with:

conda update bioconductor-nebulosa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-nebulosa:<tag>

(see bioconductor-nebulosa/tags for valid values for <tag>)

Download stats

Link to this page

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