Package Recipe 'bioconductor-nebulosa'

recipe bioconductor-nebulosa

Single-Cell Data Visualisation Using Kernel Gene-Weighted Density Estimation

Homepage:: https://bioconductor.org/packages/3.16/bioc/html/Nebulosa.html
License:: GPL-3
Recipe:: /bioconductor-nebulosa/meta.yaml

This package provides a enhanced visualization of single-cell data based on gene-weighted density estimation. Nebulosa recovers the signal from dropped-out features and allows the inspection of the joint expression from multiple features (e.g. genes). Seurat and SingleCellExperiment objects can be used within Nebulosa.

package bioconductor-nebulosa¶

Versions:

1.8.0-0, 1.4.0-0, 1.2.0-0, 1.0.2-0, 1.0.0-1

Depends:

bioconductor-singlecellexperiment >=1.20.0,<1.21.0
bioconductor-summarizedexperiment >=1.28.0,<1.29.0
r-base >=4.2,<4.3.0a0
r-ggplot2
r-ks
r-matrix
r-patchwork
r-seurat

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-nebulosa

and update with:

conda update bioconductor-nebulosa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-nebulosa:<tag>

(see bioconductor-nebulosa/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-nebulosa/README.html)