recipe bioconductor-netpathminer

NetPathMiner is a general framework for network path mining using genome-scale networks. It constructs networks from KGML, SBML and BioPAX files, providing three network representations, metabolic, reaction and gene representations. NetPathMiner finds active paths and applies machine learning methods to summarize found paths for easy interpretation. It also provides static and interactive visualizations of networks and paths to aid manual investigation.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/NetPathMiner.html

License

GPL (>= 2)

Recipe

/bioconductor-netpathminer/meta.yaml

Links

biotools: netpathminer

package bioconductor-netpathminer

(downloads) docker_bioconductor-netpathminer

Versions

1.20.0-1, 1.20.0-0, 1.18.0-0, 1.16.0-0, 1.14.0-0, 1.12.1-0

Depends
  • libgcc-ng >=7.3.0

  • libstdcxx-ng >=7.3.0

  • r-base >=3.6,<3.7.0a0

  • r-igraph >=1.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-netpathminer

and update with:

conda update bioconductor-netpathminer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-netpathminer:<tag>

(see bioconductor-netpathminer/tags for valid values for <tag>)