recipe bioconductor-netprior

A model for network-based prioritisation of genes

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/netprioR.html

License:

GPL-3

Recipe:

/bioconductor-netprior/meta.yaml

A model for semi-supervised prioritisation of genes integrating network data, phenotypes and additional prior knowledge about TP and TN gene labels from the literature or experts.

package bioconductor-netprior

(downloads) docker_bioconductor-netprior

versions:
1.28.0-01.26.0-01.24.0-01.20.0-01.18.0-01.16.0-11.16.0-01.14.0-01.12.0-0

1.28.0-01.26.0-01.24.0-01.20.0-01.18.0-01.16.0-11.16.0-01.14.0-01.12.0-01.10.0-11.10.0-01.8.1-0

depends r-base:

>=4.3,<4.4.0a0

depends r-doparallel:

depends r-dplyr:

depends r-foreach:

depends r-ggplot2:

depends r-gridextra:

depends r-matrix:

depends r-proc:

depends r-sparsemvn:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-netprior

and update with::

   mamba update bioconductor-netprior

To create a new environment, run:

mamba create --name myenvname bioconductor-netprior

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-netprior:<tag>

(see `bioconductor-netprior/tags`_ for valid values for ``<tag>``)

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