recipe bioconductor-newwave

Negative binomial model for scRNA-seq

Homepage

https://bioconductor.org/packages/3.14/bioc/html/NewWave.html

License

GPL-3

Recipe

/bioconductor-newwave/meta.yaml

A model designed for dimensionality reduction and batch effect removal for scRNA-seq data. It is designed to be massively parallelizable using shared objects that prevent memory duplication, and it can be used with different mini-batch approaches in order to reduce time consumption. It assumes a negative binomial distribution for the data with a dispersion parameter that can be both commonwise across gene both genewise.

package bioconductor-newwave

(downloads) docker_bioconductor-newwave

Versions

1.4.0-01.2.0-01.0.2-00.99.10-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-newwave

and update with:

conda update bioconductor-newwave

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-newwave:<tag>

(see bioconductor-newwave/tags for valid values for <tag>)

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