recipe bioconductor-ntw

Predict gene network using an Ordinary Differential Equation (ODE) based method

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/NTW.html

License:

GPL-2

Recipe:

/bioconductor-ntw/meta.yaml

Links:

biotools: ntw, doi: 10.1093/bioinformatics/btq629

This package predicts the gene-gene interaction network and identifies the direct transcriptional targets of the perturbation using an ODE (Ordinary Differential Equation) based method.

package bioconductor-ntw

(downloads) docker_bioconductor-ntw

versions:
1.56.0-0,  1.52.0-0,  1.50.0-0,  1.48.0-0,  1.44.0-0,  1.42.0-0,  1.40.0-1,  1.40.0-0,  1.38.0-0, 

1.56.0-0,  1.52.0-0,  1.50.0-0,  1.48.0-0,  1.44.0-0,  1.42.0-0,  1.40.0-1,  1.40.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-0

depends r-base:

>=4.4,<4.5.0a0

depends r-mvtnorm:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-ntw

and update with::

   mamba update bioconductor-ntw

To create a new environment, run:

mamba create --name myenvname bioconductor-ntw

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-ntw:<tag>

(see `bioconductor-ntw/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ntw/README.html)