recipe bioconductor-nucler

Nucleosome positioning package for R

Homepage

https://bioconductor.org/packages/3.14/bioc/html/nucleR.html

License

LGPL (>= 3)

Recipe

/bioconductor-nucler/meta.yaml

Links

biotools: nucler

Nucleosome positioning for Tiling Arrays and NGS experiments.

package bioconductor-nucler

Versions

2.26.0-0,  2.24.0-0,  2.22.0-1,  2.22.0-0,  2.20.0-0,  2.18.0-0,  2.16.0-1,  2.14.0-0,  2.12.1-0, 

2.26.0-0,  2.24.0-0,  2.22.0-1,  2.22.0-0,  2.20.0-0,  2.18.0-0,  2.16.0-1,  2.14.0-0,  2.12.1-0,  2.10.0-0,  2.8.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-rsamtools >=2.10.0,<2.11.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-shortread >=1.52.0,<1.53.0

• r-base >=4.1,<4.2.0a0

• r-dplyr

• r-ggplot2

• r-magrittr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-nucler

and update with:

conda update bioconductor-nucler

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-nucler:<tag>

(see bioconductor-nucler/tags for valid values for <tag>)

Download stats

Link to this page

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