recipe bioconductor-nucler

Nucleosome positioning for Tiling Arrays and NGS experiments.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/nucleR.html

License

LGPL (>= 3)

Recipe

/bioconductor-nucler/meta.yaml

Links

biotools: nucler

package bioconductor-nucler

Versions

2.14.0-0, 2.12.1-0, 2.10.0-0, 2.8.0-0

Depends

• bioconductor-biobase >=2.42.0,<2.43.0

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-biostrings >=2.50.0,<2.51.0

• bioconductor-genomeinfodb >=1.18.0,<1.19.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-rsamtools >=1.34.0,<1.35.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• bioconductor-shortread >=1.40.0,<1.41.0

• r-base >=3.5.1,<3.5.2.0a0

• r-dplyr

• r-ggplot2

• r-magrittr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-nucler

and update with:

conda update bioconductor-nucler

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-nucler:<tag>

(see bioconductor-nucler/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-nucler/README.html)