recipe bioconductor-nullranges

Generation of null ranges via bootstrapping or covariate matching

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/nullranges.html

License:

GPL-3

Recipe:

/bioconductor-nullranges/meta.yaml

Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrap samples of ranges (using the block bootstrap framework of Bickel et al 2010), or sets of control ranges that are matched across one or more covariates. nullranges is designed to be inter-operable with other packages for analysis of genomic overlap enrichment, including the plyranges Bioconductor package.

package bioconductor-nullranges

Versions:

1.4.0-0,  1.0.0-0

Depends:

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-interactionset >=1.26.0,<1.27.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-plyranges >=1.18.0,<1.19.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-ggplot2

• r-ggridges

• r-ks

• r-progress

• r-rlang

• r-scales

• r-speedglm

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-nullranges

and update with:

conda update bioconductor-nullranges

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-nullranges:<tag>

(see bioconductor-nullranges/tags for valid values for <tag>)

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