recipe bioconductor-nupop

NuPoP is an R package for Nucleosome Positioning Prediction.This package is built upon a duration hidden Markov model proposed in Xi et al, 2010; Wang et al, 2008. The core of the package was written in Fotran. In addition to the R package, a stand-alone Fortran software tool is also available at http://nucleosome.stats.northwestern.edu.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/NuPoP.html

License

GPL-2

Recipe

/bioconductor-nupop/meta.yaml

package bioconductor-nupop

(downloads) docker_bioconductor-nupop

Versions

1.34.0-0, 1.32.0-0

Depends
  • libgcc-ng >=7.3.0

  • libgfortran-ng >=7,<8.0a0

  • r-base >=3.5.1,<3.5.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-nupop

and update with:

conda update bioconductor-nupop

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-nupop:<tag>

(see bioconductor-nupop/tags for valid values for <tag>)