recipe bioconductor-nxtirfcore

Core Engine for NxtIRF: a User-Friendly Intron Retention and Alternative Splicing Analysis using the IRFinder Engine

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/NxtIRFcore.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-nxtirfcore/meta.yaml

Interactively analyses Intron Retention and Alternative Splicing Events (ASE) in RNA-seq data. NxtIRF quantifies ASE events in BAM files aligned to the genome using a splice-aware aligner such as STAR. The core quantitation algorithm relies on the IRFinder/C++ engine ported via Rcpp for multi-platform compatibility. In addition, NxtIRF provides convenient pipelines for downstream analysis and publication-ready visualisation tools.

package bioconductor-nxtirfcore

(downloads) docker_bioconductor-nxtirfcore

Versions:

1.0.0-11.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-nxtirfcore

and update with:

conda update bioconductor-nxtirfcore

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-nxtirfcore:<tag>

(see bioconductor-nxtirfcore/tags for valid values for <tag>)

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