- recipe bioconductor-nxtirfdata
Data for NxtIRF
- Homepage:
https://bioconductor.org/packages/3.14/data/experiment/html/NxtIRFdata.html
- License:
MIT + file LICENSE
- Recipe:
NxtIRFdata is a companion package for NxtIRF, which is an IRFinder- based R package for Intron Retention and Alternative Splicing quantitation for RNA-seq BAM files. NxtIRFdata contains Mappability files required for the generation of human and mouse references. NxtIRFdata also contains a synthetic genome reference and example BAM files used to test NxtIRF. BAM files are based on 6 samples from the Leucegene dataset provided by NCBI Gene Expression Omnibus under accession number GSE67039.
- package bioconductor-nxtirfdata¶
-
- Versions:
1.0.0-0
- Depends:
bioconductor-biocfilecache
>=2.2.0,<2.3.0
bioconductor-experimenthub
>=2.2.0,<2.3.0
bioconductor-rtracklayer
>=1.54.0,<1.55.0
curl
>=7.79.1,<8.0a0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-nxtirfdata
and update with:
conda update bioconductor-nxtirfdata
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-nxtirfdata:<tag>
(see bioconductor-nxtirfdata/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-nxtirfdata/README.html)