recipe bioconductor-nxtirfdata

Data for NxtIRF

Homepage

https://bioconductor.org/packages/3.14/data/experiment/html/NxtIRFdata.html

License

MIT + file LICENSE

Recipe

/bioconductor-nxtirfdata/meta.yaml

NxtIRFdata is a companion package for NxtIRF, which is an IRFinder- based R package for Intron Retention and Alternative Splicing quantitation for RNA-seq BAM files. NxtIRFdata contains Mappability files required for the generation of human and mouse references. NxtIRFdata also contains a synthetic genome reference and example BAM files used to test NxtIRF. BAM files are based on 6 samples from the Leucegene dataset provided by NCBI Gene Expression Omnibus under accession number GSE67039.

package bioconductor-nxtirfdata

Versions

1.0.0-0

Depends

• bioconductor-biocfilecache >=2.2.0,<2.3.0

• bioconductor-experimenthub >=2.2.0,<2.3.0

• bioconductor-rtracklayer >=1.54.0,<1.55.0

• curl >=7.79.1,<8.0a0

• r-base >=4.1,<4.2.0a0

• r-r.utils

Required By

• bioconductor-nxtirfcore

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-nxtirfdata

and update with:

conda update bioconductor-nxtirfdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-nxtirfdata:<tag>

(see bioconductor-nxtirfdata/tags for valid values for <tag>)

Download stats

Link to this page

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